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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23762226_23766728_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23762226 - 23766728
Intron Length:
4503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TAATTATTAACT
Flanking Amino Acid:
GEDNYAFDLDGNSFKKSENF
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
82.2
30.3
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
71.1
0.48
0.8
67
28.1
Minor 5ss
38.8
-1.3
2.9
47.7
43.2
Minor BPS
70
0.71
1.5
83.35
36.8

Associated Gene:

Gene:
ABCB11
Ensembl Gene ID:
ENSAPLG00000009811
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010301
23727105 - 23766825
39721