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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23776829_23777852_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23776829 - 23777852
Intron Length:
1024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TGCTTCCTAATG
Flanking Amino Acid:
AWIKAEVQSEGLWGLINNAG
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.7
29.5
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
93.6
0.98
0.6
89.1
19.8
Minor 5ss
34
-1.8
3.1
44.6
43.4
Minor BPS
54.9
0.01
1.8
60.16
42.1

Associated Gene:

Gene:
DHRS9
Ensembl Gene ID:
ENSAPLG00000009615
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010021
23776481 - 23780667
4187