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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23779409_23780251_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23779409 - 23780251
Intron Length:
843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
TTGAGTTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGTCACTGAACA
Flanking Amino Acid:
KQYGEEYFQKDAAKKEKLTK
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
79
0.65
1
72.3
42.5
Minor 5ss
25.6
-2.8
3
30.5
42.8
Minor BPS
60.2
0.32
1.7
72.44
38.4

Associated Gene:

Gene:
DHRS9
Ensembl Gene ID:
ENSAPLG00000009615
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010021
23776481 - 23780667
4187