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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23796496_23797589_R

Intron Information:

Intron Rank:
78
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23796496 - 23797589
Intron Length:
1094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTCTT
5'SS Class:
major
3'SS Sequence:
TTTATTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TAAACTTTGATT
Flanking Amino Acid:
TNFENPIYAEMEKERQQDTE
Intron Amino Acid Position:
4531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
76.3
38.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.6
0.82
0.8
84.7
35.8
Minor 5ss
46.3
-0.4
2.8
67.8
43.1
Minor BPS
63.2
0.5
1.2
73.18
37.7

Associated Gene:

Gene:
LRP2
Ensembl Gene ID:
ENSAPLG00000007540
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007973
23796334 - 23898319
101986