About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23799849_23802150_R

Intron Information:

Intron Rank:
75
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23799849 - 23802150
Intron Length:
2302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATCT
Flanking Amino Acid:
ESAIDRAMQMNENFAVESGK
Intron Amino Acid Position:
4430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
81.3
33.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
80.3
0.68
0.8
73.7
36.7
Minor 5ss
42.8
-0.8
3.4
61.3
44.6
Minor BPS
64
0.52
1.7
82.72
39.3

Associated Gene:

Gene:
LRP2
Ensembl Gene ID:
ENSAPLG00000007540
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007973
23796334 - 23898319
101986