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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23802281_23804415_R

Intron Information:

Intron Rank:
74
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23802281 - 23804415
Intron Length:
2135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
SVLPALPKLPSLSSLVKSTE
Intron Amino Acid Position:
4386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
81.4
30.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
92.5
0.96
0.7
88.4
28.6
Minor 5ss
43.3
-0.7
3.1
60.6
44.5
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
LRP2
Ensembl Gene ID:
ENSAPLG00000007540
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007973
23796334 - 23898319
101986