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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23806683_23807394_R

Intron Information:

Intron Rank:
70
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23806683 - 23807394
Intron Length:
712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TTTATCACACTT
Flanking Amino Acid:
IYHQHRYNQSVPNPCKDVCS
Intron Amino Acid Position:
4308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
87
30
Major BPS
78.3
0.7
1
80
32.1
Major PPT
77.7
0.62
0.7
69.1
31.4
Minor 5ss
36
-1.6
3.1
50.1
46.4
Minor BPS
45.2
-0.2
2
69.48
41.7

Associated Gene:

Gene:
LRP2
Ensembl Gene ID:
ENSAPLG00000007540
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007973
23796334 - 23898319
101986