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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23807575_23807972_R

Intron Information:

Intron Rank:
69
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
23807575 - 23807972
Intron Length:
398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TGGTTCCTTTGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAGAGAT
U12 Branch Point Sequence:
TGCTTGCTGACA
Flanking Amino Acid:
GTDRTVVLHGEVGSPYSLDV
Intron Amino Acid Position:
4248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
56.2
0.16
1.2
52.7
43.2
Major PPT
58.8
0.2
1.7
70
41.4
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
44.7
-0.4
2.3
59.15
40.7

Associated Gene:

Gene:
LRP2
Ensembl Gene ID:
ENSAPLG00000007540
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007973
23796334 - 23898319
101986