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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23809113_23811104_R

Intron Information:

Intron Rank:
67
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23809113 - 23811104
Intron Length:
1992

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTAATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTTTGTTTAATT
Flanking Amino Acid:
PDGLAVDWVGRHLYWTDSGT
Intron Amino Acid Position:
4131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
80.1
0.68
0.9
78.8
38.6
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
74.8
0.86
1.7
91.31
32.6

Associated Gene:

Gene:
LRP2
Ensembl Gene ID:
ENSAPLG00000007540
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007973
23796334 - 23898319
101986