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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23817356_23817819_R

Intron Information:

Intron Rank:
62
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23817356 - 23817819
Intron Length:
464

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAGGATTT
5'SS Class:
major
3'SS Sequence:
TGTGTAACTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TACTGTGTAACT
Flanking Amino Acid:
DKSCRSPVNIHCDRGMFLFS
Intron Amino Acid Position:
3885

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.9
0.35
1.1
66.6
40
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
60
0.23
1.2
58.6
41.3
Minor 5ss
44.7
-0.6
3.4
70
41.5
Minor BPS
48.8
-0
2.4
72.26
45

Associated Gene:

Gene:
LRP2
Ensembl Gene ID:
ENSAPLG00000007540
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007973
23796334 - 23898319
101986