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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23818509_23819675_R

Intron Information:

Intron Rank:
60
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23818509 - 23819675
Intron Length:
1167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTGAGTTTC
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATTTAATA
Flanking Amino Acid:
CLDFSDETTCPTRYPNGTYC
Intron Amino Acid Position:
3823

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.3
71
35.7
Major BPS
100
1.24
0.5
100
0
Major PPT
93.9
0.99
0.6
92.8
24.8
Minor 5ss
40.8
-1
2.9
53.2
38.5
Minor BPS
68.6
0.58
1.4
77.77
32.5

Associated Gene:

Gene:
LRP2
Ensembl Gene ID:
ENSAPLG00000007540
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007973
23796334 - 23898319
101986