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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23819793_23820041_R

Intron Information:

Intron Rank:
59
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23819793 - 23820041
Intron Length:
249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGTGTATT
5'SS Class:
major
3'SS Sequence:
TGAATCTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TATTTCTGAATC
Flanking Amino Acid:
CEDNSDERDCELRTCHPGYF
Intron Amino Acid Position:
3784

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
0.9
81.4
31.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
77.3
0.61
0.9
73.6
41.4
Minor 5ss
42.5
-0.8
2.8
56.3
42.5
Minor BPS
70.2
0.61
1.3
76.21
33.5

Associated Gene:

Gene:
LRP2
Ensembl Gene ID:
ENSAPLG00000007540
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007973
23796334 - 23898319
101986