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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23820810_23821721_R

Intron Information:

Intron Rank:
57
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23820810 - 23821721
Intron Length:
912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTCTG
5'SS Class:
major
3'SS Sequence:
GTGTACACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TGTTGGCAAACT
Flanking Amino Acid:
CRDNSDEQGCEEMTCSPSGD
Intron Amino Acid Position:
3705

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
67.1
43.8
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
67.9
0.4
1
59.8
41.3
Minor 5ss
44.1
-0.6
2.8
55.2
43.3
Minor BPS
40.9
-0.6
2.7
69.09
47.4

Associated Gene:

Gene:
LRP2
Ensembl Gene ID:
ENSAPLG00000007540
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007973
23796334 - 23898319
101986