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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23822999_23824576_R

Intron Information:

Intron Rank:
55
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23822999 - 23824576
Intron Length:
1578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TATATTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
AGCATCCTAATA
Flanking Amino Acid:
DRSDEDPVLCANHQCETHQW
Intron Amino Acid Position:
3580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
72.8
32.5
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
82.7
0.74
0.9
73.9
41.2
Minor 5ss
46.7
-0.3
2.5
57.4
41.8
Minor BPS
48.3
-0.1
1.7
55.59
37.3

Associated Gene:

Gene:
LRP2
Ensembl Gene ID:
ENSAPLG00000007540
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007973
23796334 - 23898319
101986