About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23824774_23825691_R

Intron Information:

Intron Rank:
54
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23824774 - 23825691
Intron Length:
918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
GCTTCCTCAACA
Flanking Amino Acid:
STQFLCADTERCIPIWWKCD
Intron Amino Acid Position:
3514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.4
1.05
0.8
80.7
33.8
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
78.7
0.65
0.9
80.7
31.3
Minor 5ss
34.5
-1.8
2.8
42.4
44.3
Minor BPS
71.8
0.68
1.5
76.68
40.2

Associated Gene:

Gene:
LRP2
Ensembl Gene ID:
ENSAPLG00000007540
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007973
23796334 - 23898319
101986