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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23825870_23826285_R

Intron Information:

Intron Rank:
53
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23825870 - 23826285
Intron Length:
416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTACCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
TTTGTTTTACCA
Flanking Amino Acid:
HVYHPYRQPFVNNPCGTNNG
Intron Amino Acid Position:
3455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
78.7
29.9
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
83.5
0.75
0.9
78
40.1
Minor 5ss
32.9
-1.9
2.9
37.3
41.2
Minor BPS
61
0.34
1.7
73.92
38.7

Associated Gene:

Gene:
LRP2
Ensembl Gene ID:
ENSAPLG00000007540
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007973
23796334 - 23898319
101986