About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23832274_23833236_R

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23832274 - 23833236
Intron Length:
963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGTGTC
5'SS Class:
major
3'SS Sequence:
TGCTTTCTATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
ACTTGCTGACCC
Flanking Amino Acid:
MSDEDQRHNCANRSCTAAEF
Intron Amino Acid Position:
2934

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
73.5
37
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
78.5
0.64
0.9
78
35.1
Minor 5ss
36
-1.6
3.6
48.3
42.5
Minor BPS
47.4
-0.2
2.1
61.28
44

Associated Gene:

Gene:
LRP2
Ensembl Gene ID:
ENSAPLG00000007540
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007973
23796334 - 23898319
101986