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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23838244_23839696_R

Intron Information:

Intron Rank:
42
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
23838244 - 23839696
Intron Length:
1453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTAT
5'SS Class:
strong_major
3'SS Sequence:
AACATAAATTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTAAACT
Flanking Amino Acid:
NGGCSHICAPGPDGAECQCP
Intron Amino Acid Position:
2659

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84
30.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
54.4
0.1
1
49.7
42.3
Minor 5ss
45.5
-0.5
2.9
64.1
47.4
Minor BPS
73.6
0.82
1.6
90.89
33.1

Associated Gene:

Gene:
LRP2
Ensembl Gene ID:
ENSAPLG00000007540
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007973
23796334 - 23898319
101986