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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23839987_23841002_R

Intron Information:

Intron Rank:
41
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
23839987 - 23841002
Intron Length:
1016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTATGTATT
5'SS Class:
weak_major
3'SS Sequence:
TTTATTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATTTCTTTATTA
Flanking Amino Acid:
EQQLYWADANLQKIERCTLT
Intron Amino Acid Position:
2562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
76.8
37.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
83.6
0.76
0.8
82.5
33.8
Minor 5ss
52.4
0.08
2.5
78.4
35.5
Minor BPS
69.2
0.6
1.5
77.34
33.8

Associated Gene:

Gene:
LRP2
Ensembl Gene ID:
ENSAPLG00000007540
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007973
23796334 - 23898319
101986