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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23844859_23844990_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23844859 - 23844990
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CAAAACATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTTTTCAAAACA
Flanking Amino Acid:
SEAMVPLAGRGRNALHVDVH
Intron Amino Acid Position:
2084

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
62
0.27
1
55.7
43.6
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
54.6
0.14
2
71.45
40.9

Associated Gene:

Gene:
LRP2
Ensembl Gene ID:
ENSAPLG00000007540
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007973
23796334 - 23898319
101986