About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23845902_23846237_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23845902 - 23846237
Intron Length:
336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGAGAT
5'SS Class:
major
3'SS Sequence:
ATTGATTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TAAGCTTTAAAT
Flanking Amino Acid:
LYWAVTSTGVIEKGNVDGTN
Intron Amino Acid Position:
1933

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
67.8
37.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
72.6
0.51
0.9
70.2
40.4
Minor 5ss
30.8
-2.2
3.7
43
45.6
Minor BPS
63.8
0.51
1.5
75.33
41

Associated Gene:

Gene:
LRP2
Ensembl Gene ID:
ENSAPLG00000007540
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007973
23796334 - 23898319
101986