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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23846416_23847565_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23846416 - 23847565
Intron Length:
1150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATTTC
5'SS Class:
major
3'SS Sequence:
TGATGTGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
TCTCCTTTACCT
Flanking Amino Acid:
PIGLSVDPARGKLYWTDQGT
Intron Amino Acid Position:
1873

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
75.6
35.3
Major BPS
76.2
0.65
1
67
39.8
Major PPT
72.2
0.5
1.1
64.7
45.6
Minor 5ss
43.7
-0.7
2.9
52.8
44.6
Minor BPS
66.1
0.58
1.6
80.9
41.2

Associated Gene:

Gene:
LRP2
Ensembl Gene ID:
ENSAPLG00000007540
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007973
23796334 - 23898319
101986