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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23847676_23848562_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23847676 - 23848562
Intron Length:
887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
AATATTTGCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TCTATATTACAT
Flanking Amino Acid:
YSNPGTQSIEVLKLHGEVMY
Intron Amino Acid Position:
1837

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
73.9
0.59
1
81
30.2
Major PPT
63.2
0.3
1
57.9
42.2
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
46.6
-0.1
2
66.61
43.8

Associated Gene:

Gene:
LRP2
Ensembl Gene ID:
ENSAPLG00000007540
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007973
23796334 - 23898319
101986