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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23848707_23849980_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23848707 - 23849980
Intron Length:
1274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTCTTTTATCT
Flanking Amino Acid:
EQMIYWVENPGEIHRVRSDG
Intron Amino Acid Position:
1789

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
75.3
37.4
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
78.5
0.64
1
78.5
33.7
Minor 5ss
40
-1.1
2.8
50
46.2
Minor BPS
60.7
0.41
1.6
76.38
40.7

Associated Gene:

Gene:
LRP2
Ensembl Gene ID:
ENSAPLG00000007540
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007973
23796334 - 23898319
101986