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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23852762_23853865_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23852762 - 23853865
Intron Length:
1104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
GTCTCCAGAACT
Flanking Amino Acid:
NRRQVVASDLILQHPHALTV
Intron Amino Acid Position:
1631

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73.4
37.3
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
77.5
0.62
0.8
69.2
37
Minor 5ss
33.8
-1.8
3.2
45.3
43.7
Minor BPS
60.7
0.41
1.8
79.09
42.3

Associated Gene:

Gene:
LRP2
Ensembl Gene ID:
ENSAPLG00000007540
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007973
23796334 - 23898319
101986