About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23854095_23855039_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23854095 - 23855039
Intron Length:
945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGACTT
5'SS Class:
major
3'SS Sequence:
TCCTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTGTTTTCAGAT
Flanking Amino Acid:
PRGLVLDPRIDGHVMFWTDW
Intron Amino Acid Position:
1554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
69.2
41.7
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
92.1
0.95
0.6
91.2
20.4
Minor 5ss
39.2
-1.2
3.3
54
43.7
Minor BPS
48
-0
1.8
68.82
42.4

Associated Gene:

Gene:
LRP2
Ensembl Gene ID:
ENSAPLG00000007540
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007973
23796334 - 23898319
101986