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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23855912_23856356_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23855912 - 23856356
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTAATTTAATT
Flanking Amino Acid:
ETNGKTCKVAESGNLLLLVA
Intron Amino Acid Position:
1422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.6
37.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.3
0.73
0.9
79.7
32.4
Minor 5ss
28.5
-2.5
3.1
39.7
45.9
Minor BPS
70
0.71
1.5
85.64
34.4

Associated Gene:

Gene:
LRP2
Ensembl Gene ID:
ENSAPLG00000007540
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007973
23796334 - 23898319
101986