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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23868393_23871131_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23868393 - 23871131
Intron Length:
2739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTATAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TATTTCGTAATT
Flanking Amino Acid:
PRGIALDPTVGRTIAHGGSV
Intron Amino Acid Position:
512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.6
32.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
74.9
0.56
1
70.6
38.1
Minor 5ss
31.6
-2.1
3.1
31.7
42.6
Minor BPS
65.3
0.56
2
84.43
36.6

Associated Gene:

Gene:
LRP2
Ensembl Gene ID:
ENSAPLG00000007540
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017639
23857467 - 23898319
40853