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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23973797_23974540_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23973797 - 23974540
Intron Length:
744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
ATTTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TAAATTTCAAAT
Flanking Amino Acid:
INITTRTANSKLRGQTEALY
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.5
33.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
90.3
0.91
0.7
85.5
28.4
Minor 5ss
42.7
-0.8
2.8
58.2
40.5
Minor BPS
48.5
-0
1.6
64.3
39.5

Associated Gene:

Gene:
KLHL41
Ensembl Gene ID:
ENSAPLG00000007022
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045038
23971395 - 23981854
10460
ENSAPLT00000038420
23971395 - 23990453
19059
ENSAPLT00000019732
23971395 - 23990453
19059
ENSAPLT00000007300
23971395 - 23981854
10460