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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23975664_23976673_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23975664 - 23976673
Intron Length:
1010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGTGA
5'SS Class:
major
3'SS Sequence:
TTTTCTTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTTCTTTAATA
Flanking Amino Acid:
NGVWNLSSDQGNLGTFFITN
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1
61.7
39.4
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
83.4
0.75
0.8
81.5
29
Minor 5ss
41.5
-0.9
3.2
55.7
48.5
Minor BPS
88
1.19
0.8
91.01
22.8

Associated Gene:

Gene:
KLHL41
Ensembl Gene ID:
ENSAPLG00000007022
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045038
23971395 - 23981854
10460
ENSAPLT00000038420
23971395 - 23990453
19059
ENSAPLT00000019732
23971395 - 23990453
19059
ENSAPLT00000007300
23971395 - 23981854
10460