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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23977347_23978156_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23977347 - 23978156
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
AGTTTCTTAATA
Flanking Amino Acid:
LALVIESSQQSGGYVLGFKI
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
76.2
0.59
0.8
71.8
31.7
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
77.2
0.85
1.1
78.17
31.9

Associated Gene:

Gene:
KLHL41
Ensembl Gene ID:
ENSAPLG00000007022
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019732
23971395 - 23990453
19059
ENSAPLT00000007300
23971395 - 23981854
10460
ENSAPLT00000045038
23971395 - 23981854
10460
ENSAPLT00000038420
23971395 - 23990453
19059