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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23978493_23980212_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23978493 - 23980212
Intron Length:
1720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTTCTCAAGG
Flanking Amino Acid:
ESDEQTDAFVAYFADENKQH
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
76.8
34.8
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
92.1
0.95
0.6
87.8
22.1
Minor 5ss
47.6
-0.2
2.8
61.3
44.6
Minor BPS
60.5
0.19
1.9
71.07
42.2

Associated Gene:

Gene:
KLHL41
Ensembl Gene ID:
ENSAPLG00000007022
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045038
23971395 - 23981854
10460
ENSAPLT00000038420
23971395 - 23990453
19059
ENSAPLT00000019732
23971395 - 23990453
19059
ENSAPLT00000007300
23971395 - 23981854
10460