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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23980237_23980346_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
23980237 - 23980346
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
GCATCCCAAAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTATTTTATCT
Flanking Amino Acid:
FVAYFADENKQHDREPVFSE
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
48.5
-0
1.1
46.2
34.5
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
59.5
0.38
1.6
75.61
41.6

Associated Gene:

Gene:
KLHL41
Ensembl Gene ID:
ENSAPLG00000007022
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045038
23971395 - 23981854
10460
ENSAPLT00000007300
23971395 - 23981854
10460