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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23980237_23986040_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23980237 - 23986040
Intron Length:
5804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
GATGCTCTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTTTTCTAAATC
Flanking Amino Acid:
FVAYFADENKLDSIAGEWVA
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
74.7
0.56
0.9
70
41.1
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
64.7
0.44
1.7
73.1
38.8

Associated Gene:

Gene:
KLHL41
Ensembl Gene ID:
ENSAPLG00000007022
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038420
23971395 - 23990453
19059
ENSAPLT00000019732
23971395 - 23990453
19059