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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23981459_23983040_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
23981459 - 23983040
Intron Length:
1582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTTCA
5'SS Class:
weak_major
3'SS Sequence:
CCCCTTTCACAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTAAA
U12 Branch Point Sequence:
CCCCCTTTCACA
Flanking Amino Acid:
CIILGIQLQSSIHKMDSQRE
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.2
70.3
36.5
Major BPS
61.3
0.28
1.1
61.7
34.1
Major PPT
60.4
0.23
1
60
34.5
Minor 5ss
57.5
0.25
1.9
68.3
42.4
Minor BPS
49.3
-0
1.8
55.59
44.1

Associated Gene:

Gene:
KLHL41
Ensembl Gene ID:
ENSAPLG00000007022
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007200
23981023 - 23990453
9431