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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23984161_23986040_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23984161 - 23986040
Intron Length:
1880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAGCT
5'SS Class:
major
3'SS Sequence:
GATGCTCTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CTTTTCTAAATC
Flanking Amino Acid:
DQPFQSYFFQLDSIAGEWVA
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
67.6
35.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
74.7
0.56
0.9
70
41.1
Minor 5ss
38.5
-1.3
3.5
56.9
47.4
Minor BPS
64.7
0.44
1.7
73.1
38.8

Associated Gene:

Gene:
KLHL41
Ensembl Gene ID:
ENSAPLG00000007022
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007200
23981023 - 23990453
9431