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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23988005_23989115_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
23988005 - 23989115
Intron Length:
1111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCTTTTCATT
Flanking Amino Acid:
SVEAFDLTTNKWEVLPEFPQ
Intron Amino Acid Position:
540

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.9
30
Major BPS
100
1.24
0.5
100
0
Major PPT
89.4
0.89
0.7
81.6
35
Minor 5ss
34.7
-1.7
3.2
41.8
38.8
Minor BPS
59.7
0.39
1.7
80.3
36.2

Associated Gene:

Gene:
KLHL41
Ensembl Gene ID:
ENSAPLG00000007022
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038420
23971395 - 23990453
19059
ENSAPLT00000019732
23971395 - 23990453
19059
ENSAPLT00000007200
23981023 - 23990453
9431