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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23993111_23993705_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23993111 - 23993705
Intron Length:
595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAACAGC
5'SS Class:
major
3'SS Sequence:
TTTCATCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTGTTTTCATCT
Flanking Amino Acid:
EWNSMVLSTKEQREHG*
Intron Amino Acid Position:
817

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
65.5
40.5
Major BPS
100
1.24
0.5
100
0
Major PPT
81.7
0.71
0.8
74
36.4
Minor 5ss
33.6
-1.9
3
43
44.2
Minor BPS
48.9
-0
1.8
66.91
44.5

Associated Gene:

Gene:
FASTKD1
Ensembl Gene ID:
ENSAPLG00000006739
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007016
23992966 - 24010253
17288
ENSAPLT00000026215
23992445 - 24008435
15991