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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23993749_23994772_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23993749 - 23994772
Intron Length:
1024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
GCAACATTAACA
Flanking Amino Acid:
LEMLGYRVIQIPHFEWNSMV
Intron Amino Acid Position:
803

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
85.8
0.81
0.8
80
32.2
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
57.4
0.23
1.7
63.49
41.9

Associated Gene:

Gene:
FASTKD1
Ensembl Gene ID:
ENSAPLG00000006739
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026215
23992445 - 24008435
15991
ENSAPLT00000007016
23992966 - 24010253
17288