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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23996524_23997621_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23996524 - 23997621
Intron Length:
1098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
AATTCTTTATTT
Flanking Amino Acid:
EHYCHHIFYTGRSRINPLRQ
Intron Amino Acid Position:
679

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
83.8
0.76
0.8
77.5
35.6
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
66.7
0.6
1.5
79.34
37

Associated Gene:

Gene:
FASTKD1
Ensembl Gene ID:
ENSAPLG00000006739
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026215
23992445 - 24008435
15991
ENSAPLT00000007016
23992966 - 24010253
17288
ENSAPLT00000033106
23994466 - 24009581
15116