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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23997754_23998496_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
23997754 - 23998496
Intron Length:
743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATC
5'SS Class:
strong_major
3'SS Sequence:
AACTTTAATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
FLSKLDAQLEVLSDTLKQRV
Intron Amino Acid Position:
635

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
87.7
26.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
66.5
0.37
1
64.2
40.9
Minor 5ss
39.6
-1.2
2.9
54
43.3
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
FASTKD1
Ensembl Gene ID:
ENSAPLG00000006739
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026215
23992445 - 24008435
15991
ENSAPLT00000007016
23992966 - 24010253
17288
ENSAPLT00000033106
23994466 - 24009581
15116