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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_23999412_24000920_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23999412 - 24000920
Intron Length:
1509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTACCG
5'SS Class:
major
3'SS Sequence:
CTCTCTTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
ACTGGCTTAATT
Flanking Amino Acid:
ASVTVENTDKIHPFEMYFIL
Intron Amino Acid Position:
554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
54.5
42.5
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
79.8
0.67
0.7
72.4
32.3
Minor 5ss
38.4
-1.3
3
49.2
46.5
Minor BPS
58.8
0.35
1.9
73.58
44

Associated Gene:

Gene:
FASTKD1
Ensembl Gene ID:
ENSAPLG00000006739
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033106
23994466 - 24009581
15116
ENSAPLT00000026215
23992445 - 24008435
15991
ENSAPLT00000007016
23992966 - 24010253
17288