About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24002546_24003707_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24002546 - 24003707
Intron Length:
1162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAATTTTT
5'SS Class:
major
3'SS Sequence:
TGTTTGTATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TCTGTTTGTATT
Flanking Amino Acid:
MKCRNSHLLKKMVSVLHKHL
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
83.5
28.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
79.8
0.67
1
77.7
40.7
Minor 5ss
47.9
-0.2
2.8
67.6
37.2
Minor BPS
45.7
-0.2
1.8
63.05
42.5

Associated Gene:

Gene:
FASTKD1
Ensembl Gene ID:
ENSAPLG00000006739
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033106
23994466 - 24009581
15116
ENSAPLT00000026215
23992445 - 24008435
15991
ENSAPLT00000007016
23992966 - 24010253
17288