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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24003819_24004951_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24003819 - 24004951
Intron Length:
1133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTTTGCTTAGGA
Flanking Amino Acid:
GPMAGSKVRERLLVTAAHVA
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.2
1.14
0.6
93.2
14.5
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
91
0.92
0.6
89.3
19.4
Minor 5ss
43.8
-0.7
2.8
58.1
46.5
Minor BPS
54.2
0.13
2.3
75.03
42.8

Associated Gene:

Gene:
FASTKD1
Ensembl Gene ID:
ENSAPLG00000006739
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033106
23994466 - 24009581
15116
ENSAPLT00000026215
23992445 - 24008435
15991
ENSAPLT00000007016
23992966 - 24010253
17288