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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24006663_24007664_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24006663 - 24007664
Intron Length:
1002

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GATGTCTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
GATGTCTTAACA
Flanking Amino Acid:
LVTEAWKRLERLSLPALSKF
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.6
1.17
0.7
96
12.5
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
68.6
0.42
1
62.4
42.9
Minor 5ss
28
-2.5
3.7
43.2
43.8
Minor BPS
70.1
0.63
1.4
72.95
38.7

Associated Gene:

Gene:
FASTKD1
Ensembl Gene ID:
ENSAPLG00000006739
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026215
23992445 - 24008435
15991
ENSAPLT00000007016
23992966 - 24010253
17288
ENSAPLT00000033106
23994466 - 24009581
15116