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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24009582_24010207_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
24009582 - 24010207
Intron Length:
626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AAAATCTCATAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
92.3
0.95
0.6
92.1
18.5
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
42.9
-0.4
1.8
55.06
39.9

Associated Gene:

Gene:
FASTKD1
Ensembl Gene ID:
ENSAPLG00000006739
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007016
23992966 - 24010253
17288