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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24022223_24024562_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24022223 - 24024562
Intron Length:
2340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTATA
5'SS Class:
major
3'SS Sequence:
CCCCCTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAGTCAC
U12 Branch Point Sequence:
AGAGAGTCACTT
Flanking Amino Acid:
TCENFRCLCTGEKGTGKSTQ
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
80.9
32.8
Major BPS
49.7
-0
1.3
55.1
42.1
Major PPT
71.8
0.49
0.7
69
24.8
Minor 5ss
41.8
-0.9
2.5
51.7
44.8
Minor BPS
33.4
-1.1
2.2
45
39.9

Associated Gene:

Gene:
PPIG
Ensembl Gene ID:
ENSAPLG00000006370
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006653
24015016 - 24041356
26341