About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24024671_24025161_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24024671 - 24025161
Intron Length:
491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGATGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ACTACTTTAAGT
Flanking Amino Acid:
FMIQGGDFSEGNGRGGESIY
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.7
39.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
79.8
0.67
1
79
33.3
Minor 5ss
38.6
-1.3
3.3
56.7
47.4
Minor BPS
61.9
0.45
1.7
74.63
42.4

Associated Gene:

Gene:
PPIG
Ensembl Gene ID:
ENSAPLG00000006370
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006653
24015016 - 24041356
26341