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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24025207_24027092_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24025207 - 24027092
Intron Length:
1886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CACTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTAAAGTAATT
Flanking Amino Acid:
GESIYGGFFEDESFAVKHNK
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
81.7
0.71
0.7
80.5
31.2
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
46.8
-0.1
2.4
75.06
41.5

Associated Gene:

Gene:
PPIG
Ensembl Gene ID:
ENSAPLG00000006370
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006653
24015016 - 24041356
26341