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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_24027181_24028281_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
24027181 - 24028281
Intron Length:
1101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTGGAAACAACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTCTCTTGAAAT
Flanking Amino Acid:
GKDTNGSQFFITTKPTPHLD
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
53
0.07
1.1
44.9
40.1
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
66.6
0.6
1.5
82.05
39.3

Associated Gene:

Gene:
PPIG
Ensembl Gene ID:
ENSAPLG00000006370
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006653
24015016 - 24041356
26341